Installation

Local prerequisites

Most workflows require:

FreeSurfer (for surface and atlas resources)
Python 3.10+ recommended
Common neuroimaging CLIs (exact tools depend on the scripts you run)

Clone the repository

git clone https://github.com/Pulkit-Khandelwal/purple-mri.git
cd purple-mri

Python dependencies

python -m venv .venv
source .venv/bin/activate
pip install -r dependencies.txt

Documentation dependencies

pip install -r docs/requirements.txt